Welcome to spk2py’s Documentation

Note

spk2py is a Python-based framework for processing and analyzing electrophysiological spike data. It extracts spike waveforms from raw Spike2 files using the lower-level SonPy library, and then performs waveform extraction and spike sorting. It also provides a number of tools for analyzing the resulting spike data. Once spikes are sorted, users are able to post-process the spikes using plots for mahalanobis distance, ISI, and autocorrelograms. The spike data can also be exported to a variety of formats for further analysis in other programs.

Getting Started

• Installation
  • Installing from source
  • Mamba Installation
• Guide
  • Autosort Procedures
  • Configuration
  • Waveform Extraction
• API
  • Autosort
  • Extraction
  • Util
  • Logging
• Package
  • spk2py

Contribute

1. Fork the repository.

2. Create your feature branch.

3. Commit your changes.

4. Open a pull request.

Contact

• GitHub: flynnoconnell/spk2py

• Email: Flynnoconnell@gmail.com

For more in-depth information, consult the API documentation in docs/api/autosort.